- 著者
-
Yamasaki Chisato
Murakami Katsuhiko
Fujii Yasuyuki
Sato Yoshiharu
Harada Erimi
Takeda Jun-ichi
Taniya Takayuki
Satake Ryuichi
Kikugawa Shingo
Shimada Makoto
Tanino Motohiko
Halligan Brian
Shimoyama Mary
Twigger Simon
Yura Kei
Kimura Kouichi
Yasuda Tomohiro
Nishikawa Tetsuo
Akiyama Yutaka
Motono Chie
Mukai Yuri
Shionyu Masafumi
Nagasaki Hideki
Suwa Makiko
Horton Paul
Kikuno Reiko
Ohara Osamu
Lancet Doron
Eveno Eric
Graudens Esther
Imbeaud Sandrine
Debily Marie Anne
Jia Libin
Hayashizaki Yoshihide
Amid Clara
Han Michael
Osanger Andreas
Endo Toshinori
Thomas Michael A.
Hirakawa Mika
Makalowski Wojciech
Nakao Mitsuteru
Kim Nam-Soon
Thierry-Mieg Danielle
Yoo Hyang-Sook
De Souza Sandro J.
Bonaldo Maria de Fatima
Niimura Yoshihito
Kuryshev Vladimir
Schupp Ingo
Wiemann Stefan
Bellgard Matthew
Thierry-Mieg Jean
Wagner Lukas
Zhang Qinghua
Go Mitiko
Minoshima Shinsei
Ohtsubo Masafumi
Hanada Kousuke
Koyanagi Kanako O.
Tonellato Peter
Isogai Takao
Zhang Ji
Lenhard Boris
Kim Sangsoo
Chen Zhu
Hinz Ursula
Estreicher Anne
Nakai Kenta
Makalowska Izabela
Barrero Roberto A.
Hide Winston
Tiffin Nicola
Wilming Laurens
Chakraborty Ranajit
Soares Marcelo Bento
Chiusano Maria Luisa
Suzuki Yutaka
Auffray Charles
Yamaguchi-Kabata Yumi
Itoh Takeshi
Gough Craig
Hishiki Teruyoshi
Fukuchi Satoshi
Nishikawa Ken
Sugano Sumio
Nomura Nobuo
Tateno Yoshio
Imanishi Tadashi
Gojobori Takashi
Chun Hong-Woo
Habara Takuya
Hanaoka Hideki
Hayakawa Yosuke
Hilton Philip B.
Kaneko Yayoi
Kanno Masako
Kawahara Yoshihiro
Kawamura Toshiyuki
Matsuya Akihiro
Nagata Naoki
Nishikata Kensaku
Ogura Noda Akiko
Nurimoto Shin
Saichi Naomi
Sakai Hiroaki
Sanbonmatsu Ryoko
Shiba Rie
Suzuki Mami
Takabayashi Kazuhiko
Takahashi Aiko
Tamura Takuro
Tanaka Masayuki
Tanaka Susumu
Todokoro Fusano
Yamaguchi Kaori
Yamamoto Naoyuki
Okido Toshihisa
Mashima Jun
Hashizume Aki
Jin Lihua
Lee Kyung-Bum
Lin Yi-Chueh
Nozaki Asami
Sakai Katsunaga
Tada Masahito
Miyazaki Satoru
Makino Takashi
Ohyanagi Hajime
Osato Naoki
Tanaka Nobuhiko
Suzuki Yoshiyuki
Ikeo Kazuho
Saitou Naruya
Sugawara Hideaki
O'Donovan Claire
Kulikova Tamara
Whitfield Eleanor
- 出版者
- Oxford University Press
- 雑誌
- Nucleic Acids Research (ISSN:03051048)
- 巻号頁・発行日
- vol.36, no.1, pp.D793-D799, 2008-01
- 被引用文献数
-
12
Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of full-length cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB_4.6. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 (98.1%) protein-coding and 642 (1.9%) non-protein-coding loci; 858 (2.5%) transcribed loci overlapped with predicted pseudogenes. For all these transcripts and genes, we provide comprehensive annotation including gene structures, gene functions, alternative splicing variants, functional non-protein-coding RNAs, functional domains, predicted sub cellular localizations, metabolic pathways, predictions of protein 3D structure, mapping of SNPs and microsatellite repeat motifs, co-localization with orphan diseases, gene expression profiles, orthologous genes, protein–protein interactions (PPI) and annotation for gene families. The current H-InvDB annotation resources consist of two main views: Transcript view and Locus view and eight sub-databases: the DiseaseInfo Viewer, H-ANGEL, the Clustering Viewer, G-integra, the TOPO Viewer, Evola, the PPI view and the Gene family/group.