- 著者
- Annette L. Fayet Masaki Shirai Sakiko Matsumoto Aimee Van Tatenhove Ken Yoda Akiko Shoji
- 出版者
- The Ornithological Society of Japan
- 雑誌
- ORNITHOLOGICAL SCIENCE (ISSN:13470558)
- 巻号頁・発行日
- vol.18, no.2, pp.189-195, 2019 (Released:2019-07-29)
- 参考文献数
- 37
- 被引用文献数
- 1
To identify drivers of local variation in breeding success in colonial seabirds, we studied the role of breeding phenology and parental quality on the breeding performance of two neighbouring subcolonies of Streaked Shearwaters Calonectris leucomelas, with similar habitat but different success. Egg dimension and parental quality during incubation, but not phenology, predicted hatching success. Birds at the low-success colony laid smaller eggs, reared smaller chicks and neglected eggs more frequently, leaving them vulnerable to predation. Our findings suggest that local variation in breeding performance in this species arises from differences in breeding quality, perhaps driven by age or experience.
- 著者
- Masaki Shirai Takuya Nara Haruko Takahashi Kazuya Takayama Yuan Chen Yudai Hirose Masashi Fujii Akinori Awazu Nobuyoshi Shimoda Yutaka Kikuchi
- 出版者
- The Genetics Society of Japan
- 雑誌
- Genes & Genetic Systems (ISSN:13417568)
- 巻号頁・発行日
- pp.21-00092, (Released:2022-06-18)
- 参考文献数
- 42
CpG methylation of genomic DNA is a well-known repressive epigenetic marker in eukaryotic transcription, and DNA methylation of promoter regions is correlated with gene silencing. In contrast to the promoter regions, the function of DNA methylation during transcription termination remains to be elucidated. A recent study revealed that mouse DNA methyltransferase 3a (Dnmt3a) mainly functions in de novo methylation in the promoter and gene body regions, including transcription termination sites (TTSs), during development. To investigate the relationship between DNA methylation overlapping the TTSs and transcription termination, we performed bioinformatics analysis using six pre-existing Dnmt-/- mouse cell datasets: four types of neurons (three Dnmt3a-/- and one Dnmt1-/- mutants) and two types of embryonic fibroblasts (MEFs) (Dnmt3a-/- and Dnmt3b-/- mutants). Combined analyses using methylome and transcriptome data revealed that read counts downstream of hypomethylated TTSs were increased in three types of neurons (two Dnmt3a-/- and one Dnmt1-/- mutants). Among these, an increase in chimeric transcripts downstream of the TTSs was observed in Dnmt3a-/- mature olfactory sensory neurons and Dnmt3a-/- agouti-related peptide (protein)-producing neurons, thereby indicating that read-through occurs in hypomethylated TTSs at specific gene loci in these two mutants. Conversely, in Dnmt3a-/- MEFs, we detected reductions in read counts downstream of hypomethylated TTSs. These results indicate that the hypomethylation of TTSs can both positively and negatively regulate transcription termination, dependent on Dnmt and cell types. This study is the first to identify the aberrant termination of transcription at specific gene loci with DNA hypomethylated TTSs attributable to Dnmt deficiency.