著者

Eizo NAKAMURA Katsura KOBAYASHI Ryoji TANAKA Tak KUNIHIRO Hiroshi KITAGAWA Christian POTISZIL Tsutomu OTA Chie SAKAGUCHI Masahiro YAMANAKA Dilan M. RATNAYAKE Havishk TRIPATHI Rahul KUMAR Maya-Liliana AVRAMESCU Hidehisa TSUCHIDA Yusuke YACHI Hitoshi MIURA Masanao ABE Ryota FUKAI Shizuho FURUYA Kentaro HATAKEDA Tasuku HAYASHI Yuya HITOMI Kazuya KUMAGAI Akiko MIYAZAKI Aiko NAKATO Masahiro NISHIMURA Tatsuaki OKADA Hiromichi SOEJIMA Seiji SUGITA Ayako SUZUKI Tomohiro USUI Toru YADA Daiki YAMAMOTO Kasumi YOGATA Miwa YOSHITAKE Masahiko ARAKAWA Atsushi FUJII Masahiko HAYAKAWA Naoyuki HIRATA Naru HIRATA Rie HONDA Chikatoshi HONDA Satoshi HOSODA Yu-ichi IIJIMA Hitoshi IKEDA Masateru ISHIGURO Yoshiaki ISHIHARA Takahiro IWATA Kosuke KAWAHARA Shota KIKUCHI Kohei KITAZATO Koji MATSUMOTO Moe MATSUOKA Tatsuhiro MICHIKAMI Yuya MIMASU Akira MIURA Tomokatsu MOROTA Satoru NAKAZAWA Noriyuki NAMIKI Hirotomo NODA Rina NOGUCHI Naoko OGAWA Kazunori OGAWA Chisato OKAMOTO Go ONO Masanobu OZAKI Takanao SAIKI Naoya SAKATANI Hirotaka SAWADA Hiroki SENSHU Yuri SHIMAKI Kei SHIRAI Yuto TAKEI Hiroshi TAKEUCHI Satoshi TANAKA Eri TATSUMI Fuyuto TERUI Ryudo TSUKIZAKI Koji WADA Manabu YAMADA Tetsuya YAMADA Yukio YAMAMOTO Hajime YANO Yasuhiro YOKOTA Keisuke YOSHIHARA Makoto YOSHIKAWA Kent YOSHIKAWA Masaki FUJIMOTO Sei-ichiro WATANABE Yuichi TSUDA

出版者

The Japan Academy

雑誌

Proceedings of the Japan Academy, Series B (ISSN:03862208)

巻号頁・発行日

vol.98, no.6, pp.227-282, 2022-06-10 (Released:2022-06-10)

参考文献数

245

被引用文献数

90

---

Presented here are the observations and interpretations from a comprehensive analysis of 16 representative particles returned from the C-type asteroid Ryugu by the Hayabusa2 mission. On average Ryugu particles consist of 50% phyllosilicate matrix, 41% porosity and 9% minor phases, including organic matter. The abundances of 70 elements from the particles are in close agreement with those of CI chondrites. Bulk Ryugu particles show higher δ18O, Δ17O, and ε54Cr values than CI chondrites. As such, Ryugu sampled the most primitive and least-thermally processed protosolar nebula reservoirs. Such a finding is consistent with multi-scale H-C-N isotopic compositions that are compatible with an origin for Ryugu organic matter within both the protosolar nebula and the interstellar medium. The analytical data obtained here, suggests that complex soluble organic matter formed during aqueous alteration on the Ryugu progenitor planetesimal (several 10’s of km), <2.6 Myr after CAI formation. Subsequently, the Ryugu progenitor planetesimal was fragmented and evolved into the current asteroid Ryugu through sublimation.

著者

Yusuke Hibino Kaoru Kuriiwa Tetsuya Yamada Kiyotaka Hatooka Kar Hoe Loh Tetsuro Sasaki

出版者

The Japanese Society of Systematic Zoology

雑誌

Species Diversity (ISSN:13421670)

巻号頁・発行日

vol.25, no.2, pp.177-182, 2020-08-07 (Released:2020-08-07)

参考文献数

12

---

Four specimens from Minami-iwo-to island of Volcano Islands were identified as Uropterygius oligospondylus Chen, Randall, and Loh in Loh et al., 2008. It is the first identified record from Japan and the northernmost record of the species. Uropterygius oligospondylus can be characterized by the following characters: total vertebrae 100–103; body gray with blackish reticular pattern; jaws teeth in two or three rows; anus close to mid-body; head 13.7–16.7% TL; trunk 32.8–36.6% TL; body depth at gill opening 5.8–8.3% TL; eye diameter 3.9–5.3% of head length; snout 16.2–20.3% of head length; and presence of a distinct notch above mid-eye. A new Japanese standard name “Kobu-kikai-utsubo” is proposed for the species. The position of the fourth infraorbital pores from original description should be revised as “far behind posterior end of eye”.

著者

Seung-won Choi Kie Kumaishi Reiko Motohashi Harumi Enoki Wiluk Chacuttayapong Tadashi Takamizo Hiroaki Saika Masaki Endo Tetsuya Yamada Aya Hirose Nobuya Koizuka Seisuke Kimura Yaichi Kawakatsu Hiroyuki Koga Emi Ito Ken Shirasu Yasunori Ichihashi

出版者

Japanese Society for Plant Biotechnology

雑誌

Plant Biotechnology (ISSN:13424580)

巻号頁・発行日

vol.39, no.3, pp.323-327, 2022-09-25 (Released:2022-09-25)

参考文献数

28

---

Agrobacterium-mediated transformation is a key innovation for plant breeding, and routinely used in basic researches and applied biology. However, the transformation efficiency is often the limiting factor of this technique. In this study, we discovered that oxicam-type nonsteroidal anti-inflammatory drugs, including tenoxicam (TNX), increase the efficiency of Agrobacterium-mediated transient transformation. TNX treatment increased the transformation efficiency of Agrobacterium-mediated transformation of Arabidopsis thaliana mature leaves by agroinfiltration. The increase of efficiency by TNX treatment was not observed in dde2/ein2/pad4/sid2 quadruple mutant, indicating that TNX inhibits the immune system mediated by jasmonic acid, ethylene, and salicylic acid against to Agrobacterium. We also found that TNX-treatment is applicable for the transient expression and subcellular localization analysis of fluorescent-tagged proteins in Arabidopsis leaf cells. In addition, we found that TNX increases the efficiency of Agrobacterium-mediated transient transformation of Jatropha. Given that treatment with oxicam compounds is a simple and cost effective method, our findings will provide a new option to overcome limitations associated with Agrobacterium-mediated transformation of various plant species.

著者

Tetsuya YAMADA Satoshi KAWAICHI Akihisa MATSUYAMA Minoru YOSHIDA Nobuhiro MATSUSHITA Ryuhei NAKAMURA

出版者

公益社団法人 電気化学会

雑誌

Electrochemistry (ISSN:13443542)

巻号頁・発行日

vol.84, no.5, pp.312-314, 2016-05-05 (Released:2016-05-05)

参考文献数

19

被引用文献数

3

---

The present study investigated extracellular electron transfer (EET) of Pseudomonas stutzeri, a model organism for bacterial denitrification. Electrochemical cultivation of P. stutzeri in a lithotrophic medium with Fe2+ ions generated the clear cathodic current associated with denitrification reactions. The EET ability of P. stutzeri was greatly strengthened by the addition of acetate, which correlated with the enhanced rate of the enzymatic oxidation of Fe2+. Since the addition of acetate induced the change of cellular metabolisms from lithotrophic denitrification to mixotrophic one, the present finding suggests the effectiveness of EET monitoring as a descriptor of bacterial denitrification activity and changing metabolisms according to the environmental conditions.

著者

Shin-ichiro Agake Fernanda Plucani do Amaral Tetsuya Yamada Hitoshi Sekimoto Gary Stacey Tadashi Yokoyama Naoko Ohkama-Ohtsu

出版者

Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles

雑誌

Microbes and Environments (ISSN:13426311)

巻号頁・発行日

vol.37, no.1, pp.ME21060, 2022 (Released:2022-01-27)

参考文献数

61

被引用文献数

3

---

Spores are a stress-resistant form of Bacillus spp., which include species that are plant growth-promoting rhizobacteria (PGPR). Previous studies showed that the inoculation of plants with vegetative cells or spores exerted different plant growth-promoting effects. To elucidate the spore-specific mechanism, we compared the effects of viable vegetative cells, autoclaved dead spores, and viable spores of Bacillus pumilus TUAT1 inoculated at 107 CFU plant–1 on the growth of the C4 model plant, Setaria viridis A10.1. B. pumilus TUAT1 spores exerted stronger growth-promoting effects on Setaria than on control plants 14 days after the inoculation. Viable spores increased shoot weight, root weight, shoot length, root length, and nitrogen uptake efficiency 21 days after the inoculation. These increases involved primary and crown root formation. Additionally, autoclaved dead spores inoculated at 108 or 109 CFU plant–1 had a positive impact on crown root differentiation, which increased total lateral root length, resulting in a greater biomass and more efficient nitrogen uptake. The present results indicate that an inoculation with viable spores of B. pumilus TUAT1 is more effective at enhancing the growth of Setaria than that with vegetative cells. The plant response to dead spores suggests that the spore-specific plant growth-promoting mechanism is at least partly independent of symbiotic colonization.

著者

Jaechol Sim Yuhei Kanazashi Tetsuya Yamada

出版者

Japanese Society for Plant Biotechnology

雑誌

Plant Biotechnology (ISSN:13424580)

巻号頁・発行日

vol.40, no.3, pp.247-254, 2023-09-25 (Released:2023-09-25)

参考文献数

24

被引用文献数

2

---

In general, plant organ size is determined using cell number and expansion. In our previous study, we generated soybean (Glycine max) mutants of the PEAPOD (PPD) genes GmPPD1 and GmPPD2 using the clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated endonuclease 9 system. Some of these mutants exhibited extremely abnormal phenotypes, such as twisted pods and limited seeds. These phenotypes were attributed to the frameshift mutation in both GmPPD loci. In this study, the physiological and molecular biological properties of mutant plants with two knocked-out GmPPD loci (ppd-KO) were characterized. The ppd-KO mutant exhibited a delayed growth phase from the time of development of the unifoliolate leaves to that of first trifoliolate leaves and a stay-green phenotype, which were not observed in the other mutants of soybean or ppd mutants of other plant species. Gene expression analysis revealed considerably decreased expression of SPIRAL1-LIKE 5 (GmSP1L5), mainly causing the twisted pod phenotype observed in the ppd-KO mutant. The relationship between PPD and SP1L5 has not been previously reported, and in this study, we showed that that loss of PPD functioning affects SP1L5 expression in soybean. In this study, we revealed that the decrease in PPD function contributed to organ enlargement and that complete knockout of PPD has a negative effect on soybean organogenesis.

著者

Jaechol Sim Chikako Kuwabara Shota Sugano Kohei Adachi Tetsuya Yamada

出版者

Japanese Society for Plant Biotechnology

雑誌

Plant Biotechnology (ISSN:13424580)

巻号頁・発行日

vol.40, no.3, pp.193-200, 2023-09-25 (Released:2023-09-25)

参考文献数

59

被引用文献数

1

---

Genetic improvement of soybean seed traits is important for developing new varieties that meet the demand for soybean as a food, forage crop, and industrial products. A large number of soybean genome sequences are currently publicly available. This genome sequence information provides a significant opportunity to design genomic approaches to improve soybean traits. Genome editing represents a major advancement in biotechnology. The production of soybean mutants through genome editing is commonly achieved with either an Agrobacterium-mediated or biolistic transformation platform, which have been optimized for various soybean genotypes. Currently, the clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated endonuclease 9 (Cas9) system, which represents a major advance in genome editing, is used to improve soybean traits, such as fatty acid composition, protein content and composition, flavor, digestibility, size, and seed-coat color. In this review, we summarize the recent advances in the improvement of soybean seed traits through genome editing. We also discuss the characteristics of genome editing using the CRISPR/Cas9 system with transformation platforms.

著者

Yujiro Nakano Chikara Komiya Hitomi Shimizu Hiroyuki Mishima Kumiko Shiba Kazutaka Tsujimoto Kenji Ikeda Kenichi Kashimada Sumito Dateki Koh-ichiro Yoshiura Yoshihiro Ogawa Tetsuya Yamada

出版者

The Japan Endocrine Society

雑誌

Endocrine Journal (ISSN:09188959)

巻号頁・発行日

vol.67, no.11, pp.1099-1105, 2020 (Released:2020-11-28)

参考文献数

27

被引用文献数

3 3

---

Sitosterolemia is caused by homozygous or compound heterozygous gene mutations in either ATP-binding cassette subfamily G member 5 (ABCG5) or 8 (ABCG8). Since ABCG5 and ABCG8 play pivotal roles in the excretion of neutral sterols into feces and bile, patients with sitosterolemia present elevated levels of serum plant sterols and in some cases also hypercholesterolemia. A 48-year-old woman was referred to our hospital for hypercholesterolemia. She had been misdiagnosed with familial hypercholesterolemia at the age of 20 and her serum low-density lipoprotein cholesterol (LDL-C) levels had remained about 200–300 mg/dL at the former clinic. Although the treatment of hydroxymethylglutaryl-CoA (HMG-CoA) reductase inhibitors was ineffective, her serum LDL-C levels were normalized by ezetimibe, a cholesterol transporter inhibitor. We noticed that her serum sitosterol and campesterol levels were relatively high. Targeted analysis sequencing identified a novel heterozygous ABCG5 variant (c.203A>T; p.Ile68Asn) in the patient, whereas no mutations were found in low-density lipoprotein receptor (LDLR), proprotein convertase subtilisin/kexin type 9 (PCSK9), or Niemann-Pick C1-like intracellular cholesterol transporter 1 (NPC1L1). While sitosterolemia is a rare disease, a recent study has reported that the incidence of loss-of-function mutation in the ABCG5 or ABCG8 gene is higher than we thought at 1 in 220 individuals. The present case suggests that serum plant sterol levels should be examined and ezetimibe treatment should be considered in patients with hypercholesterolemia who are resistant to HMG-CoA reductase inhibitors.

著者

Shingo OKUBO Yoshihisa OZEKI Tetsuya YAMADA Kosuke SAITO Noboru ISHIHARA Yasuko YANAGIDA Gen MAYANAGI Jumpei WASHIO Nobuhiro TAKAHASHI

出版者

The Electrochemical Society of Japan

雑誌

Electrochemistry (ISSN:13443542)

巻号頁・発行日

pp.22-00020, (Released:2022-05-31)

被引用文献数

5

著者

Kalimullah Saighani Daiki Kondo Naoto Sano Kazumasa Murata Tetsuya Yamada Motoki Kanekatsu

出版者

Japanese Society for Plant Biotechnology

雑誌

Plant Biotechnology (ISSN:13424580)

巻号頁・発行日

vol.38, no.2, pp.277-283, 2021-06-25 (Released:2021-06-25)

参考文献数

34

被引用文献数

8

---

The mature embryos of rice seeds contain translatable mRNAs required for the initial phase of germination. To clarify the relationship between seed longevity and RNA integrity in embryos, germinability and stability of embryonic RNAs were analyzed using the seeds of japonica rice cultivars subjected to controlled deterioration treatment (CDT) or long periods of storage. Degradation of RNA from embryos of a japonica rice cultivar “Nipponbare” was induced by CDT before the decline of the germination rate and we observed a positive relationship between seed germinability and integrity of embryonic RNAs. Moreover, this relationship was confirmed in the experiments using aged seeds from the “Nipponbare”, “Sasanishiki” and “Koshihikari” rice cultivars. In addition, the RNA integrity number (RIN) values, calculated using electrophoresis data and Agilent Bioanalyzer software, had a positive correlation with germinability (R2=0.75). Therefore, the stability of embryonic RNAs required for germination is involved in maintaining seed longevity over time and RIN values can serve as a quantitative indicator to evaluate germinability in rice.

著者

Kumpei Shiragaki Rie Nakamura Shigeki Nomura Hai He Tetsuya Yamada Wataru Marubashi Masayuki Oda Takahiro Tezuka

出版者

Japanese Society for Plant Biotechnology

雑誌

Plant Biotechnology (ISSN:13424580)

巻号頁・発行日

vol.37, no.3, pp.327-333, 2020-09-25 (Released:2020-09-25)

参考文献数

41

被引用文献数

11

---

Hybrid lethality observed in hybrid seedlings between Nicotiana suaveolens and N. tabacum is characterized by browning, initially of the hypocotyls and eventually of entire seedlings. We investigated the mechanism underlying this browning of tissues. A phenylalanine ammonia-lyase (PAL) gene codes an enzyme involved in a pathway producing phenolic compounds related to the browning of plant tissues. The expression of PAL rapidly increased with the induction of hybrid lethality. Phenolic compounds were observed to be accumulated in whole parts of hybrid seedlings. Treatment of hybrid seedlings with L-2-aminooxy-3-phenylpropionic acid (AOPP), an inhibitor for PAL, suppressed browning and decreased the phenolic content of hybrid seedlings. Although programmed cell death (PCD) was involved in hybrid lethality, AOPP treatment also suppressed cell death and enhanced the growth of hybrid seedlings. These results indicated that PAL is involved in hybrid lethality, and phenolic compounds could be the cause of hybrid lethality-associated tissue browning.