著者

Katsuhiko Sumitomo Kenta Shirasawa Sachiko N. Isobe Hideki Hirakawa Akiho Harata Masato Kawabe Masafumi Yagi Masaaki Osaka Miyuki Kunihisa Fumiya Taniguchi

出版者

Japanese Society of Breeding

雑誌

Breeding Science (ISSN:13447610)

巻号頁・発行日

pp.20063, (Released:2021-03-25)

被引用文献数

6

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White rust caused by Puccinia horiana Henn. adversely affects chrysanthemum (Chrysanthemum morifolium Ramat.) production. The breeding of resistant varieties is effective in controlling the disease. Here we aimed to develop DNA markers for the strong resistance to P. horiana. We conducted a linkage analysis based on the genome-wide association study (GWAS) method. We employed a biparental population for the GWAS, wherein the single nucleotide polymorphism (SNP) allele frequency could be predicted. The population was derived from crosses between a strong resistant “Southern Pegasus” and a susceptible line. The GWAS used simplex and double-simplex SNP markers selected out of SNP candidates mined from ddRAD-Seq data of an F1 biparental population. These F1 individuals segregated in a 1:1 ratio of resistant to susceptible. Twenty-one simplex SNPs were significantly associated with P. horiana resistance in “Southern Pegasus” and generated one linkage group. These results show the presence of a single resistance gene in “Southern Pegasus”. We identified the nearest SNP marker located 2.2 cM from P. horiana resistance locus and demonstrated this SNP marker-resistance link using an independent population. This is the first report of an effective DNA marker linked to a gene for P. horiana resistance in chrysanthemum.

著者

Atsuko Uragami Reiichirou Ueno Atsushi Yamasaki Kentaro Matsuo Takayuki Yamaguchi Hideo Tokiwa Tamio Takizawa Hiroaki Sakai Takao Ikeuchi Shin-ichi Watanabe Kuninori Matsunaga Miyuki Kunihisa Hiroaki Kitazawa Satoru Motoki

出版者

一般社団法人 園芸学会

雑誌

The Horticulture Journal (ISSN:21890102)

巻号頁・発行日

pp.MI-115, (Released:2016-03-30)

被引用文献数

11

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This study analyzes the first large-scale asparagus experiment in Japan to examine the productive differences between male and female plants using the rootstock-planting forcing culture technique. This technique has recently been developed in Japan and uses dug-up rootstocks for one-season harvests during the off-crop season. As larger spears and early sprouting are especially favored in this culture for higher yield, it is important to clarify and evaluate the productive traits of the male and female plants. We conducted collaborative research among eight institutes from Hokkaido to Kyushu to examine plants grown at different cultivation sites. There were two digging-up months and different low-temperature backgrounds. Plant rootstocks sourced from the eight different sites used in the experiment were cultured in an abandoned tunnel in Nagano Prefecture, Japan, in a large area with uniform temperature and high humidity throughout the year, and their white spears were harvested. The results of this study show that the female plants had a significantly higher rootstock weight, weight per spear per plant, and weight per early spear per plant, whereas the male plants had a significantly higher total spear number per plant, early spear number per plant, and significantly fewer days to first harvest. No significant differences were observed in soluble solid contents of roots, total spear weight per plant, or early spear weight per plant. It seems that male plants have a tendency to sprout earlier than female plants in response to reduced accumulated low temperature hours, and also to produce a higher total spear number per rootstock weight and total spear weight per rootstock weight. The ranges of most of the productive traits analyzed in this study completely overlapped between the sexes. However, female plants showed higher variation in weight per spear per plant and weight per early spear per plant.

著者

Kenji Nashima Makoto Takeuchi Chie Moromizato Yuta Omine Moriyuki Shoda Naoya Urasaki Kazuhiko Tarora Ayaka Irei Kenta Shirasawa Masahiko Yamada Miyuki Kunihisa Chikako Nishitani Toshiya Yamamoto

出版者

The Japanese Society for Horticultural Science

雑誌

The Horticulture Journal (ISSN:21890102)

巻号頁・発行日

pp.QH-063, (Released:2023-05-31)

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The pineapple (Ananas comosus (L.) Merr.) is an economically important tropical fruit crop. In this study, we performed quantitative trait locus (QTL) analysis using 168 individuals of the F1 population of ‘Yugafu’ × ‘Yonekura’ for 15 traits: leaf color (L*, a*, b*), harvest day, crown number, slip number, stem shoot number, sucker number, fruit weight, fruit height, fruit diameter, fruit shell color, soluble solid content, acidity, and ascorbic acid content. The constructed single-nucleotide polymorphism (SNP)-based genetic linkage map consisted of a total genetic distance of 2,595 cM with 3,123 loci, including 22,330 SNPs across 25 chromosomes. QTL analysis detected 13 QTLs for 9 traits: leaf color a*, harvest day, fruit weight, fruit height, fruit diameter, fruit shell color, soluble solid content, acidity, and ascorbic acid content. The causative gene for each QTL was predicted with two genes identified as candidate genes. The AcCCD4 gene on Aco3.3C08 was the predicted causative gene for the shell color QTL, which negatively controls shell color by carotenoid degradation. The Myb domain protein-encoding gene on Aco3.3C02 was the predicted causative gene for shell color and leaf color a* QTL, which positively regulates anthocyanin accumulation. The QTL and gene information provided here contributes to future marker-assisted selection for fruit quality.

著者

Takuya Wada Yuji Noguchi Sachiko Isobe Miyuki Kunihisa Takayuki Sueyoshi Katsumi Shimomura

出版者

一般社団法人 園芸学会

雑誌

The Horticulture Journal (ISSN:21890102)

巻号頁・発行日

pp.MI-142, (Released:2017-01-14)

被引用文献数

11

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A strawberry core collection was established based on simple sequence repeat and cleavage amplified polymorphic sequence marker polymorphisms in 119 strawberry cultivars using the “PowerCore” program. The core collection consisted of 19 cultivars. The correlation coefficients for the diversity index were significant between the core collection cultivars and all cultivars. Allele frequencies of each marker allele were not significantly different between the core collection cultivars and all cultivars according to Fisher’s exact test. Cluster analysis indicated that the selected core collection cultivars evenly distributed throughout the multiple clusters and principle component analysis clearly showed major principle components of core collection cultivars distributed widely among those of all cultivars. Furthermore, core collection cultivars tended to harbor minor alleles. These results demonstrated that the core collection cultivars were suitably selected in terms of reflecting the genetic diversity of all strawberry cultivars.

著者

Shigeki Moriya Miyuki Kunihisa Kazuma Okada Hiroshi Iwanami Hiroyoshi Iwata Mai Minamikawa Yuichi Katayose Toshimi Matsumoto Satomi Mori Harumi Sasaki Takashi Matsumoto Chikako Nishitani Shingo Terakami Toshiya Yamamoto Kazuyuki Abe

出版者

一般社団法人 園芸学会

雑誌

The Horticulture Journal (ISSN:21890102)

巻号頁・発行日

pp.MI-156, (Released:2016-07-23)

被引用文献数

21

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During apple (Malus × domestica Borkh.) storage, a loss in fruit firmness can occur. This is frequently associated with mealiness, an undesirable trait. There have been studies, such as phenotypic analyses and transcriptomics, as well as others employing a transgenic approach, focusing on this trait. Certain genetic approaches, such as quantitative trait loci (QTL) approach, however, have not been attempted. In this study, to identify and characterize QTLs controlling flesh mealiness and to investigate their application in apple breeding, we performed classical QTL mapping based on a bi-parental population and a genome-wide association study (GWAS) of mealiness. Phenotypic data for mealiness allowed us to identify two QTLs in the bi-parental family located on linkage group 10. The GWAS discovered significant marker-trait associations on chromosomes 2, 9, and 10. The MdPG1 locus, located on chromosome 10, was identified as the locus with the strongest significance by both QTL mapping and GWAS, suggesting its primary contribution to flesh mealiness. Using a tri-allelic simple sequence repeat marker, Md-PG1SSR10kd, 10 kb downstream of the MdPG1 coding sequence, we divided apple accessions into six groups based on their genotypes. Among the six groups, the Md-PG1SSR10kd genotype “2/2” had the least mealy phenotype.